PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g090260.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 257aa    MW: 27881.3 Da    PI: 9.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g090260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00172042223
                        EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                        +Cp C   F+++ ++++Hirt H
  Solyc09g090260.1.1 20 RCPLCYGAFRTHLQFMNHIRTtH 42
                        8********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNANVPPPS FLSSCRVLLR CPLCYGAFRT HLQFMNHIRT THLLTSERNT ILCSHAYASN  60
ILSPENPLGS QLAAPQHTSS QNVIRHSSGY PSATLLRENM LSAQSTTPQR VSPQNVNLRP  120
PLYSSGSLLL SSVQHAAPQN VIQRCPLYGS GNFFTGNMSS PQPAAAQHHA TSRGNNNIVI  180
LSSNRNSPTR ISDRAPPINW QQMASRNRVG GPNSNDSAID CTRSLANRLN VPVPTNVDEL  240
ANIADEQNDV DLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g090260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7I8M30.0A0A3Q7I8M3_SOLLC; Uncharacterized protein
STRINGSolyc09g090260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1508233
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]