PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g089920.1.1
Common NameLOC101261069
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 153aa    MW: 17170.2 Da    PI: 9.3701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g089920.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-211971256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdp++  g   r +lg+f+taeeAa+a+++a+ +l+g+
  Solyc09g089920.1.1 19 KYRGVRRRP-WGKFAAEIRDPTTrPG--SRQWLGTFDTAEEAARAYDKAAFNLRGH 71
                        8********.**********988544..999***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.2631978IPR001471AP2/ERF domain
PfamPF008475.3E-141971IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-301980IPR001471AP2/ERF domain
SMARTSM003804.9E-361984IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-221979IPR016177DNA-binding domain
CDDcd000183.78E-311979No hitNo description
PRINTSPR003673.5E-112031IPR001471AP2/ERF domain
PRINTSPR003673.5E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGNSSRGKK AMQEKDEVKY RGVRRRPWGK FAAEIRDPTT RPGSRQWLGT FDTAEEAARA  60
YDKAAFNLRG HLATLNFPNE YYNQLSCPPL YYGNNNNNII CSSTNNVSRG KGISSSSSTN  120
YKGREIIELE CLDNSVLEEL LGVEDPKITK RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-281913614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g089920.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247925.11e-110ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7I8X11e-109A0A3Q7I8X1_SOLLC; Uncharacterized protein
STRINGSolyc09g089920.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-32ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]