PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g089910.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 144aa    MW: 16158.8 Da    PI: 5.8331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g089910.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202576256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Solyc09g089910.1.1 25 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 76
                        8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-232584IPR016177DNA-binding domain
SMARTSM003801.1E-332589IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-312585IPR001471AP2/ERF domain
PfamPF008471.9E-152576IPR001471AP2/ERF domain
CDDcd000181.27E-182584No hitNo description
PRINTSPR003679.6E-122637IPR001471AP2/ERF domain
PRINTSPR003679.6E-124965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MELKLNMEQD PSNERRTNGG GGEIKYRGVR RRPWGKFAAE IRDSARQGAR VWLGTFNTAE  60
EAARAYDRAA YSMRGHLAIL NFPEEYNLPS SSSHFYSAGS YSSSSMASSS SSSSSRQVLE  120
FEYLDDKLLE ELLDCDEEPN KRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-402514314129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g089910.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247924.21e-101ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7J2W91e-100A0A3Q7J2W9_SOLLC; Uncharacterized protein
STRINGSolyc09g089910.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]