PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g089600.1.1
Common NameLOC101258995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 192aa    MW: 22199.7 Da    PI: 5.8628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g089600.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113456123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Solyc09g089600.1.1 34 YECNFCKRGFTNAQALGGHMNIH 56
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.07E-73261No hitNo description
Gene3DG3DSA:3.30.160.603.4E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASEKINNYS DSSSEDTTID RESEKFNDGI GRSYECNFCK RGFTNAQALG GHMNIHRKDK  60
LKAKQNNQES STKLSKEANY VFDNSRYNNN NNYAPISSHD ELQHHDHYSR AQMNSYQFHF  120
QLPQNPNHNQ HIYNQHHDGS RTRHENYYDG NNLSLRIGPT LIDDDDEEGE GKKDVDESEL  180
DLELRLGYSN H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g089600.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888863.11e-140transcriptional regulator TAC1-like
TrEMBLA0A3Q7J2S61e-139A0A3Q7J2S6_SOLLC; Uncharacterized protein
STRINGSolyc09g089600.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-15C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]