PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g075640.2.1
Common NameLOC101261361
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 758aa    MW: 86881.1 Da    PI: 7.0284
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g075640.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.7e-2059152190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY++++k++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnH
  Solyc09g075640.2.1  59 EFYCSFGKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdhnVPEWRITGFSNVHNH 149
                         6***************999887455667********************9*******************99888555568************ PP

                FAR1  88 ela 90 
                         el 
  Solyc09g075640.2.1 150 ELL 152
                         *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-1759152IPR004330FAR1 DNA binding domain
PfamPF105511.7E-21275366IPR018289MULE transposase domain
PROSITE profilePS5096610.175551587IPR007527Zinc finger, SWIM-type
PfamPF044344.7E-8559585IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPEITNIAKE TFENGTDSSQ DDTGTVEEMP EDTILQRQTS VNLIPFIGQR FVSQDAAYEF  60
YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG  120
CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTEMQLI PAYCTMSPDD KSRICMFVKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEVDVR HFLQSFRNVD QDNDPIDLLK MCKEMKDKDL  240
KFKYDYKIDC NNRLEHIAWS YASSMRLYEY FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG  300
SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPATMLTD QNLWLKEAIA TEMPRVKHAF  360
CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YQLDGNKHIA  420
SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSILGNFVE QVVRVVDAKD  480
QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTPFAFSKLQ EELVFAPQYA SLMVDESYFV  540
VRHHKEMGRG YKVLWIPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW  600
REFTSSVAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG  660
LPTASNSGNA IAYESPSNSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY  720
GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.140570.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g075640.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247382.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_010326560.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_025888546.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A3Q7I7710.0A0A3Q7I771_SOLLC; Uncharacterized protein
STRINGSolyc09g075640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]