PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g074780.2.1
Common NameLOC101259784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 521aa    MW: 57535.1 Da    PI: 9.1016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g074780.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-057698123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Solyc09g074780.2.1 76 FVCEICNKGFQRDQNLQLHRRGH 98
                        89*******************88 PP

2zf-C2H215.64.7e-05152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H++t+
  Solyc09g074780.2.1 152 WKCDKCSKKYAVQSDWKAHQKTC 174
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-87598No hitNo description
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
PfamPF121718.3E-57698IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM0035570117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-8147173No hitNo description
SMARTSM0035594152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSNISGEEGS FSSGEEAHLH TSNNNISSIT TSNGSTSQSQ QQQPLAKKKR NLPGNPDPNA  60
EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTA EVKKRVYICP  120
EPTCVHHNPS RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK  180
CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNME HNMHSGQMHE IMSSNASLGL  240
SEFNNFDPKN SLKALPQELL PIPFKSMTNN MAPGGMFSIT SGNLFGNSPR SVASSSSGLQ  300
LSSNIPSNFN YLQDNGKNRV AQGQGQLSSV PMSATALLQK AAQMGATASS SINSPMMQKS  360
FVTSAMAGPD ISITRPSPNY DNFQMQQDSN NHQSQSQNQN LAAVINDMGI YSGILMSNDQ  420
NNDGGYIKNV TEVLDRDNHN HSTNDRVRNQ TMMVQNGSND MLTVDFLGIG GASRAPISNL  480
QEQRRFEAAI NQQRLQASSS FHHQQNINHN SGLEKPIWDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35148218372Zinc finger protein JACKDAW
5b3h_F6e-35148218372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g074780.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247541.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3Q7I6R10.0A0A3Q7I6R1_SOLLC; Uncharacterized protein
STRINGSolyc09g074780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]