PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g072830.2.1
Common NameLOC101245990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 451aa    MW: 49380.1 Da    PI: 4.7221
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g072830.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.9e-34250304155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r+rWtpeLHe+Fveav++LGGse+AtPk +l++mkv+gLt++hvkSHLQkYR+
  Solyc09g072830.2.1 250 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKMMKVEGLTIYHVKSHLQKYRT 304
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.736247307IPR017930Myb domain
SuperFamilySSF466895.2E-18248304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-31249306IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-25250304IPR006447Myb domain, plants
PfamPF002491.1E-10252303IPR001005SANT/Myb domain
PfamPF143797.5E-26336383IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEARPAVSVQ SVVASQLSNC GASGALSSSL SIFPTALGEK YPKFPDLQQA SMGKELKQHP  60
ATVVSSLPSN SGAVGLMFSS SSGFSADLQF SSVSPQEKHS GTAPFISQST YSETSIQLPH  120
SGVLQSTASS QYLNENHEPW CIDPLPNFLD YSMDNPVQNS QVASSNKQSD WQEWADLVLN  180
DEDALPSDWN DIIADTSIGD SELKMQFQEE KQPLNFPMQQ VQASQQIPPV PVETSAIAPV  240
SSPASSAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKMMKVEGL TIYHVKSHLQ  300
KYRTARYKPE ASEAGSSEKK QSSLDDLASL DLKTGIEITE ALRLQMEVQK RLHEQLEIQR  360
NLQLRIEEQG RYLQMMFEKQ CKSMPGADLA KGSSSSTADD AFAQLSQVDT AKEVDHEKQK  420
EREIEVLGDP ETNITSTSDS PPLKRSKLDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-32250308260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.87600.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g072830.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8286782e-09Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247499.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
TrEMBLA0A3Q7I5300.0A0A3Q7I530_SOLLC; Uncharacterized protein
STRINGSolyc09g072830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.14e-92phosphate starvation response 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]