PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g066010.2.1
Common NameLOC543857
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 332aa    MW: 37304.4 Da    PI: 10.1367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g066010.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31265322359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Solyc09g066010.2.1 265 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 322
                         9************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18216261IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33251323IPR003657WRKY domain
PROSITE profilePS5081129.884258324IPR003657WRKY domain
SuperFamilySSF1182903.92E-27261323IPR003657WRKY domain
SMARTSM007749.4E-39263323IPR003657WRKY domain
PfamPF031062.3E-27265322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVIS KLSQPHDEKI LARETGEAVH KFKKVVTLLN SNLGHARVRK  60
TKKILTPFPH SLLLENSSCK IVDDQLKPLQ LLPITYPENI RLEIGSNVNR IHPSLELNSH  120
SKNPLQLAQQ TSYHFAQQQQ QQRRYQLQQQ ADMMYRRSNS GISLNFDSST CTPTMSSTRS  180
FISSLSIDGS VANLDGNAFH FIGASRSADQ SSVQHKKRCS GRGEEGSVKC GSSGRCHCSK  240
KRKHRVKRSI KVPAISNKLA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH  300
VERCLEEPSM LIVTYEGEHN HPRLPSQSAN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20256326776WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g066010.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1570625e-90Lycopersicon esculentum WRKY transcription factor IId-3 mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247222.10.0probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-117WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3Q7J0C90.0A0A3Q7J0C9_SOLLC; Uncharacterized protein
STRINGSolyc09g066010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-109WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]