PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g063010.2.1
Common NameLOC101264668
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 558aa    MW: 60261.6 Da    PI: 6.3855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g063010.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16351397455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Solyc09g063010.2.1 351 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 397
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-21344405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-21345414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-17350401No hitNo description
PfamPF000105.3E-14351397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-19353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MNHSVPDFDM DDDFSLPASS GITRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKPHI  60
GNGSGGGGDA VIPSDQAVSR EIRHVEETTP HHLFMQEDEM ASWLHYPLDD PSFERDLYSD  120
LLYPTPTSTF TTAALPRENR TSTFEIRPPP PQPSPAAPIG TAPRPPIPPS RRTVTENSNR  180
FQNFGHFSRL PKARLEPGQA NLSKSPRDST VVDSNVTPIT GQESRVTLIP DNVVAVPGGN  240
VGCSTVNGST GTATASTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP APAPSHKGAA  300
PTATAAADDR KRKGREMEDE GQNEDAEFES PDTKKQARGS TSTKRSRAAE VHNLSERRRR  360
DRINEKMKAL QELIPRCNKT DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMYPGMQPY  420
MPPMGMGMGM GMGMDIGMNR PMVPYPPLLP GTAMQNAAAA AQMGPRFSIP QFHLPPVPVP  480
DPSRMQASSQ PDPMLNSLVS HNSNQPRLPN FSDPYQQFFG LQQAQVALPQ NQAVEQPSNS  540
KSGSSKEVGN PGNHQSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.6140.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247109.10.0PREDICTED: transcription factor PIF1-like
TrEMBLK4CU320.0K4CU32_SOLLC; Uncharacterized protein
STRINGSolyc09g063010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-39phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]