PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g059510.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 192aa    MW: 22001.5 Da    PI: 6.3764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g059510.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-1260101351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Solyc09g059510.2.1  60 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 101
                         79**98..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.54442114IPR001471AP2/ERF domain
SMARTSM003807.6E-559116IPR001471AP2/ERF domain
PfamPF008471.5E-659102IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-860104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-762106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPSTDIDESK EKIAVKVVPG SSNSHASGSL MEQTAQQFPE VKRRKRHRRK HFENQEPCLM  60
RGVYFKNMKW QAAIKVDKKQ IHLGTVGTQE EAARLYDRAA FMCGREPNFE LSEEEKQELR  120
QFKWDDFLAF TRSAITNKKT RRRSGAGARR KFEPLTSALN SEEDEEEEEG GEPESNSFSA  180
SEDIEHDILF S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.109491e-158cell culture| fruit| leaf| stem| trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g059510.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540665e-98Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247071.11e-139ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A3Q7I2K01e-138A0A3Q7I2K0_SOLLC; Uncharacterized protein
STRINGSolyc09g059510.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.16e-49ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]