PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g010230.1.1
Common NameLOC101257504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 346aa    MW: 39112.7 Da    PI: 7.5906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g010230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.21.6e-3360174199
                         EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                         f+k ltpsdv+k++rlv+pk++ae++                +g +e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+
  Solyc09g010230.1.1  60 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgsnnsnsnnnniDGGTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLD 150
                         99*******************************99999999955567999***************************************** PP

                         TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                         +gD+v+F ++++++ +l+++++r+
  Solyc09g010230.1.1 151 AGDIVLFDRHRSDTDRLFIGWRRR 174
                         ********98889999******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4153183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-3057173IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-2758164No hitNo description
PfamPF023621.8E-3060175IPR003340B3 DNA binding domain
PROSITE profilePS5086314.43860175IPR003340B3 DNA binding domain
SMARTSM010192.5E-2860175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSINHISSET FWWTKKQPPS FPNMFEFNLN NNMNNNSTNE DDELVQNEDK FEEIPRDHLF  60
EKPLTPSDVG KLNRLVIPKQ HAEKYFPLSG SNNSNSNNNN IDGGTEKGLL LSFEDESGKS  120
WRFRYSYWNS SQSYVLTKGW SRFVKEKRLD AGDIVLFDRH RSDTDRLFIG WRRRNIISAP  180
ISTAAVRHNT AAAMTGNIGG GGGGWAHVYY GGHPYPRAGA GLPYQPDCLH AGRGAMQNQT  240
TTSVNNNTRR HVRLFGVNLE CEADDSSWSE PPPTPDGGGS STSSHHQDHG RSQDQASQHY  300
YQYQFQYSKP HVAVSATASS YNNNHHNHKD MNFSRDVNQM RYHQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-50561744113B3 domain-containing transcription factor NGA1
5os9_B4e-50561744113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g010230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246879.20.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ24e-67Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A3Q7ITT70.0A0A3Q7ITT7_SOLLC; Uncharacterized protein
STRINGSolyc09g010230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-61B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]