PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g009240.1.1
Common NameLOC101262848
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 203aa    MW: 22078.9 Da    PI: 6.2725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g009240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-193384155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+G+r++k++g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+ +l+g
  Solyc09g009240.1.1 33 PVYRGIRRRKSSGKWVSEIREPK----SpNRIWLGTFPTPEMAAIAYDVAAIALKG 84
                        68*******************93....578**********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-123384IPR001471AP2/ERF domain
PROSITE profilePS5103222.1023492IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-193494IPR016177DNA-binding domain
SMARTSM003804.4E-323498IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-283494IPR001471AP2/ERF domain
PRINTSPR003679.6E-83546IPR001471AP2/ERF domain
CDDcd000188.03E-303594No hitNo description
PRINTSPR003679.6E-87494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTTTTYGGKN IIIGGSNNSR TAPNNKSYSG RHPVYRGIRR RKSSGKWVSE IREPKSPNRI  60
WLGTFPTPEM AAIAYDVAAI ALKGPEADLN FPNSAASFPV PATSSARDIQ TAAARAAAAI  120
GAAGDALLAA AAVHREVVIN EKGKLENVEI QNFEFMDEDL IFDMPNVLVN MAEGMLLSPP  180
RFYMHDDDDQ TTITYQNLWN YT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g009240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888712.11e-149ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-53ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3Q7HZ491e-147A0A3Q7HZ49_SOLLC; Uncharacterized protein
STRINGSolyc09g009240.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-44ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]