PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g008850.2.1
Common NameLOC101247746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 533aa    MW: 58101.1 Da    PI: 6.8381
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g008850.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.2e-18146232186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea+ e+  +l+rg+l++ +Weev+  +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  Solyc09g008850.2.1 146 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAVMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GLTISHWPWFKQME 232
                         5**********************************999767778899************************98.88999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-20144234No hitNo description
Gene3DG3DSA:3.40.1160.104.6E-67280525IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.522286526IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.28E-53286525IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.3E-5288302IPR001057Glutamate/acetylglutamate kinase
CDDcd042546.32E-111289526No hitNo description
PfamPF006964.4E-23290505IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.3E-5432459IPR001057Glutamate/acetylglutamate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0006561Biological Processproline biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVAV TPTTTTANPN YHHQPFSSVR YKPVQIHPPP ISAGSPKNIS  60
GDEDDGDGYS DNNAQSYHMG VNPYENDSIP FENDTNVNRS RGKSSNEKRA DREDISDNGT  120
PYSYKRSRIS SSSGSGSGEY RKDREEWSDT AIACLLEAYM EKFVQLNRGN LRGRDWEEVA  180
VMVSERCEKQ SKSVEQCKNK VDNLKKRYKL ERHRMSNGGL TISHWPWFKQ MEQIVGNSVS  240
VKATSEEDKA IVPMNNSSTG RQPKRYGTAV PSPSGQIVKA KSSMSPRWRR VVLKISGAAL  300
AGMTPNTNDA NNIDPKVATL LAAEVSIACR LGIEVAIVVG GRNFFCGETW VTSTGLERCT  360
AYQIGMMATL MNSILLQSAL EKVGVQTRVQ SAFNMPELTE PYSRQRAMRH LEKGRVVIFG  420
GIGAGTGNPL FSTDTVAALR ASEIHADAIL KATNVDGVYV CDSRNNNVVA EHISFRELVS  480
GGDSPLDLMA VTLCEENAFP VVIFNLHGPG NISRALCGEQ VGTLIDQTGR VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-562885259239Uridylate kinase
3ek5_B1e-562885259239Uridylate kinase
3ek5_C1e-562885259239Uridylate kinase
3ek5_D1e-562885259239Uridylate kinase
3ek5_E1e-562885259239Uridylate kinase
3ek5_F1e-562885259239Uridylate kinase
3ek6_A1e-562885259239Uridylate kinase
3ek6_B1e-562885259239Uridylate kinase
3ek6_C1e-562885259239Uridylate kinase
3ek6_D1e-562885259239Uridylate kinase
3ek6_E1e-562885259239Uridylate kinase
3ek6_F1e-562885259239Uridylate kinase
3nwy_A3e-5627152534279Uridylate kinase
3nwy_B3e-5627152534279Uridylate kinase
3nwy_C3e-5627152534279Uridylate kinase
3nwy_D3e-5627152534279Uridylate kinase
3nwy_E3e-5627152534279Uridylate kinase
3nwy_F3e-5627152534279Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.178630.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246577.10.0PREDICTED: uncharacterized protein LOC101247746
TrEMBLK4CQS00.0K4CQS0_SOLLC; Uncharacterized protein
STRINGSolyc09g008850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]