PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g008440.1.1
Common NameLOC101256516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 311aa    MW: 34951.9 Da    PI: 8.165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g008440.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032124146123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Solyc09g008440.1.1 124 YQCKTCNRSFPSFQALGGHRASH 146
                         9***********99999998887 PP

2zf-C2H213.10.00028209231123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Solyc09g008440.1.1 209 HECSICGAEFNSGQALGGHMRRH 231
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-8123146No hitNo description
PfamPF139128.6E-13123148IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679124151IPR007087Zinc finger, C2H2
SMARTSM003550.03124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.83E-8204231No hitNo description
PfamPF139125.1E-13208232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577209231IPR007087Zinc finger, C2H2
SMARTSM003550.011209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MIKIKKCYTM EVHDDRGCDQ DQQLNMVIKR RRTKRPRPPS PLTLGITTSS CSTVEGASSG  60
ELVDGHVANS LLRSNNCGGM IDDKIVRNTN QEEEDMANCL ILLAQGHNFQ KSSSLSQSPT  120
LDVYQCKTCN RSFPSFQALG GHRASHKKPK TLEDQIKNLK SNDHHHHQQA ENNIRLKLNN  180
NDDHVTTLSL QIPNNSNNNS NNKNKNRVHE CSICGAEFNS GQALGGHMRR HRPLPNSIAI  240
TSNHHIHEES HHHHHHDQQI IKNNTRAFLS LDLNLPAPED DHRPENSKFT FATKEQVIVF  300
SASSLVDCHY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13337KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g008440.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2542336e-06Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-12l9 map 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246607.10.0zinc finger protein ZAT5
TrEMBLA0A3Q7HYQ70.0A0A3Q7HYQ7_SOLLC; Uncharacterized protein
STRINGSolyc09g008440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-48C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]