PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g007990.2.1
Common NameLOC101268308
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 520aa    MW: 58198 Da    PI: 6.6756
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g007990.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-10404451448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
  Solyc09g007990.2.1 404 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 451
                         ***************************999****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.444396455IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13398458IPR009057Homeodomain-like
SuperFamilySSF466891.51E-16398459IPR009057Homeodomain-like
SMARTSM007171.2E-11400453IPR001005SANT/Myb domain
CDDcd116605.10E-20404452No hitNo description
PfamPF002499.8E-8404451IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNQNSAYRSG FASLGVWFDE SETRDDHASI SGVLCFDEKR VLKGMERKGA LYNIGSSIAS  60
KRENEINQDV LDLKRSQFEA GKIQAQNDLS TPCEDYLLDI EFAESITNLD YGSSRGLLDP  120
ILESQIPLSS CDGTDTCGMP YSAGLVVQES QSQNAMFGLT NSELHDLSRD KCESQMLVEY  180
NAVKFPTAFN PGDISNVDDV AGFFAEAAAS EKMNDSMIDH SALTSNGISF MSTATQNEGQ  240
DVNCESFDMH ESSEISPPVT SEAINIDTPV TQKRLRKPTR RYIDESSNLN AKRRKKRAEV  300
STSGAESKNK LLKVRCQKKP RAESMEMVLF SEESSYEAIQ VPFASLVNEE CDDWDASDAI  360
QVFKPHKEEP PHKEATTVVN HKDDDVTPKK LVQDGVRRKH HRLWTVSEVR KLIDGVAQYG  420
VGRWSHIKKL YFSSSVHRTP VDLKDKWRNL LKATYLQKQS KSTEKGKHNL SWRPLPKSVL  480
HRVSELANMH PYPRNRRCKS SRSPCASSSP EHSNSSNTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.60090.0cell culture| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g007990.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476041e-23Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071244.10.0uncharacterized protein LOC101268308 isoform X2
TrEMBLA0A3Q7HWM80.0A0A3Q7HWM8_SOLLC; Uncharacterized protein
STRINGSolyc09g007990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-27TRF-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]