PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g007580.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 201aa    MW: 21988.5 Da    PI: 4.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g007580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1259103347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++++   +G+g+W++I+r+   +Rt+ q+ s+ qky
  Solyc09g007580.1.1  59 AWTEEEHRSFLRGLDIYGKGDWRSISRHCVITRTAMQVASHAQKY 103
                         6***************************9989************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.341125IPR017884SANT domain
PROSITE profilePS5129416.87552108IPR017930Myb domain
SuperFamilySSF466891.2E-1555108IPR009057Homeodomain-like
SMARTSM007171.1E-956106IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.8E-1558106IPR006447Myb domain, plants
CDDcd001672.65E-1059104No hitNo description
PfamPF002491.2E-1059103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-1059105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEEALPGKTV DEIKDHYNIL LEDIDAIDFG GAPLPNYAEI QSNVNQNINA DVQWRRGAAW  60
TEEEHRSFLR GLDIYGKGDW RSISRHCVIT RTAMQVASHA QKYFKRVEAN KKGNRRRRAK  120
PSVLDITGVD TELGGTSEVP ITADMIDPAC EGSQAVPNTS TESMCYPEST NAEQMTTVVG  180
GENAFVNVDA SSGTSELLLV *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g007580.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3022312e-20S.lycopersicum DNA sequence from clone LE_HBa-291F9, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888763.11e-144transcription factor SRM1-like
SwissprotQ9FNN61e-35SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7HY871e-142A0A3Q7HY87_SOLLC; Uncharacterized protein
STRINGSolyc09g007580.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Representative plantOGRP1230136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-36MYB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]