PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g005560.2.1

Common Name

LOC101249201

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 294aa MW: 34425.9 Da PI: 7.6943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g005560.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.6	2.3e-25	45	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+e+g++rsp+qCk+kw+nl +ryk +++ e + ++++p++++l+ Solyc09g005560.2.1 45 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKEKGYNRSPEQCKCKWKNLVTRYKGCETVEPEA--L-RQQFPFYNELQ 127 7******************************************************************95..3.4589***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.02E-23	44	109	No hit	No description
Pfam	PF13837	7.8E-21	45	129	No hit	No description
PROSITE profile	PS50090	7.445	46	102	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDPHLHHHQH HLQQQQHQFS HQSVNIDTTS GGVNIGGGGG DRFPQWSIQE TRDFLMIRAE 60 LDQTFMETKR NKLLWEVIAT KMKEKGYNRS PEQCKCKWKN LVTRYKGCET VEPEALRQQF 120 PFYNELQAIF GARMQRMLWI EAEGGVGGGA SGSKKKAISS DEEEENDDSD GEKVGKKKRK 180 VKGSMMVGSS SGNNNNNNLV SSLKEILDDF MKQQMVMEMQ WLKAYEAKEE ERRIKEMEWR 240 QTMEALENER LMMETRWRER EEQRRMREEA RAEKRDALIT TLLNKLRRED HNM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-13	42	106	3	67	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	KKKRKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246753.1	0.0	PREDICTED: trihelix transcription factor GT-3b
Swissprot	O80450	6e-70	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	K4CQ46	0.0	K4CQ46_SOLLC; Uncharacterized protein
STRING	Solyc09g005560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35
Asterids	OGEA4187	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	9e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc09g005560.2.1
Entrez Gene	101249201

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]