PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g082210.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 265aa    MW: 30143.2 Da    PI: 9.8321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g082210.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18109159256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Solyc08g082210.2.1 109 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 159
                         59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-16108168No hitNo description
PROSITE profilePS5103223.235109166IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22109166IPR016177DNA-binding domain
SMARTSM003801.5E-35109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30109167IPR001471AP2/ERF domain
PRINTSPR003673.9E-10110121IPR001471AP2/ERF domain
PfamPF008479.3E-13110159IPR001471AP2/ERF domain
PRINTSPR003673.9E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDRIQENNSM SSIFDEGAQI RSSLSQLILT SSTNTFDTIF SHCQENNQMS NSPVFEPLGT  60
SVYLRQRDLL QKFCQENIAN ISIPTTSKTI PFRNSLYTQS YKLPEKKKLY RGVRQRHWGK  120
WVAEIRLPQN RMRVWLGTYE TAEAAAYAYD RAAYKLRGEY ARLNFPNVRD PSKLGFGDGE  180
KMNAVKNAVD AKIQAICQRV KREKAKKAAK KKSENESKVK ETMDSSSSTT TTTMISPSVS  240
EDGLWRSEDS TFVHLQECLL LILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21106166263ATERF1
3gcc_A2e-21106166263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.104040.0callus| flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g082210.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083644.11e-153ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-60ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0V0I2191e-145A0A0V0I219_SOLCH; Putative ethylene-responsive transcription factor-like
STRINGSolyc08g082210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-46ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]