PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g080290.2.1
Common NameLOC101246746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 265aa    MW: 28391.9 Da    PI: 5.6168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g080290.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1599146355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Solyc08g080290.2.1  99 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 146
                         89**9.55.6*********843...5***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-2598154IPR001471AP2/ERF domain
PROSITE profilePS5103219.4498154IPR001471AP2/ERF domain
SMARTSM003802.3E-2698162IPR001471AP2/ERF domain
PfamPF008472.7E-999146IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1799155IPR016177DNA-binding domain
CDDcd000184.32E-1599154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MADSQNSTKS TQIIQPPNQS SESTKIPFNT TLPPPLPPLP PPPAPPETHI QITNTLSSKL  60
ENTNTTPKTV IIPTAIMSST SSSGLGSPSR SIGGKHAVFR GIRCRSGKWV SEIREPRKTT  120
RIWLGTYPTP EMAAAAYDVA AMALKGNDAV INFPGNINSY PSLPPSPAAA DIRKAAATAA  180
ALMKIESGET TSGTQPGTDD HRSLGNVHMM ETRDHEYIDE EALFDMPNLL VDMAEAMMVS  240
PPRMSSPRSD DSPEHSDAEN LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1589158576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.113010.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO58941540.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g080290.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108110.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245652.10.0ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ907e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q7HTS90.0A0A3Q7HTS9_SOLLC; Uncharacterized protein
STRINGSolyc08g080290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-33ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]