PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g078420.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 148aa    MW: 16340.4 Da    PI: 6.677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g078420.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18858256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g+
  Solyc08g078420.1.1  8 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAIAIKGH 58
                        69****888.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-13758IPR001471AP2/ERF domain
CDDcd000185.08E-34767No hitNo description
Gene3DG3DSA:3.30.730.102.2E-31866IPR001471AP2/ERF domain
SMARTSM003803.4E-36871IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21866IPR016177DNA-binding domain
PROSITE profilePS5103222.431865IPR001471AP2/ERF domain
PRINTSPR003671.5E-10920IPR001471AP2/ERF domain
PRINTSPR003671.5E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDDSKHPIYH GVRKRSWGKW VSEIREPRKK SRIWLGTFST AEMAARAHDV AAIAIKGHLA  60
LLNFPELAHQ FPIPSSKCAK DIQSAAAKAA ALNISPRNFM EKQSTDELME MPCSSEETES  120
AESSLTSNSE DPFLDLPDNS YGSYSKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description