PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g078190.1.1
Common NameLOC101267548
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 323aa    MW: 36263.7 Da    PI: 6.3189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g078190.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20183233255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+  ++g
  Solyc08g078190.1.1 183 HYRGVRQRP-WGKYAAEIRDPRRRG--SRVWLGTFDTAIEAAKAYDKAAFTMRG 233
                         7********.**********96554..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32182242IPR001471AP2/ERF domain
CDDcd000186.42E-30183241No hitNo description
PfamPF008475.8E-14183233IPR001471AP2/ERF domain
SMARTSM003801.7E-36183247IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22183243IPR016177DNA-binding domain
PROSITE profilePS5103223.644183241IPR001471AP2/ERF domain
PRINTSPR003671.7E-10184195IPR001471AP2/ERF domain
PRINTSPR003671.7E-10207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEYVDEFFAL EKIRTHLLGE FSPRTLKFGA ELTSSKCSDT VTESCDSESA SSGSLPFDFF  60
FDIEADLFQF GAGVSNSSSE SANSVYNRTD FVKIESEPSI SSSDYEENQS KRFQFKSEPQ  120
VFIDLTSPKS RKLCSASDRK PSLKIDLPPV KKYEWIDFGN SAQSNPIVSV PVKQIREAEE  180
KRHYRGVRQR PWGKYAAEIR DPRRRGSRVW LGTFDTAIEA AKAYDKAAFT MRGSKAILNF  240
PLEVGKTLSY SSSAVEGGVK RRREAVETEE EKVVKKCKEE ESCPLTPSSW NFVFEQNCNG  300
MFNLPPLSPL SPHLSCSQLI QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29182244163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.177660.0fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g078190.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107830.0Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315543.10.0ethylene response factor B.13
SwissprotQ404788e-58ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A3Q7HUM00.0A0A3Q7HUM0_SOLLC; Uncharacterized protein
STRINGSolyc08g078190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-37ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]