PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g077110.2.1
Common NameLOC101264451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 341aa    MW: 38189.5 Da    PI: 5.073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g077110.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.1e-5361331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratksgyWkatgkd
  Solyc08g077110.2.1   6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDKKYPNGSRTNRATKSGYWKATGKD 95 
                         79****************************.99**************95334445667********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ + ++vg +ktLvfy+grap g +tdWvmheyrl
  Solyc08g077110.2.1  96 RKVVC-HPAVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                         *****.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-624156IPR003441NAC domain
PROSITE profilePS5100557.9646156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DLEWFFFCPR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC HPAVVGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDVTQG TPSFQGPFAL CRVIKRNDVS LKTKDVGGVK QVGSSTSTTS  180
GAFTLVNEPP NALSDETPTQ SAYMSNDSNY STPIASPYQT TQFGDYESAI GANSANLWMS  240
SAMILDSSKE CPQGQNVSNY CPQYDFSSMT PWQPSDQSEF TSNSTFPSFR GEVELSGDLS  300
SFGCMSPYSI HGSYVGLYGN EDMTYEVFNQ NDSNRNPNLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52116212171NO APICAL MERISTEM PROTEIN
1ut4_B2e-52116212171NO APICAL MERISTEM PROTEIN
1ut7_A2e-52116212171NO APICAL MERISTEM PROTEIN
1ut7_B2e-52116212171NO APICAL MERISTEM PROTEIN
4dul_A2e-52116212171NAC domain-containing protein 19
4dul_B2e-52116212171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.160591e-178flower| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g077110.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245880.10.0NAC domain-containing protein 71-like
SwissprotO496975e-96NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3Q7HU200.0A0A3Q7HU20_SOLLC; Uncharacterized protein
STRINGSolyc08g077110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-97NAC domain containing protein 71
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]