PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g076330.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 71aa    MW: 8220.45 Da    PI: 9.6788
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g076330.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.92.8e-121964146
                FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46
                        kfY +YA++  Fsvrk++ ++s+++++i+ ++fvCskeg+r ++ +
  Solyc08g076330.1.1 19 KFYLDYAHRNSFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKCN 64
                        6***************************************988754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-101963IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MNAVPYIVME FQSLDTGFKF YLDYAHRNSF SVRKNRISRS RKDKSIIGQE FVCSKEGFRL  60
KKCNQACNCD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g076330.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095931e-110Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068484.11e-31protein FAR1-RELATED SEQUENCE 5
RefseqXP_025884696.13e-33protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_025884722.12e-32protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025884850.11e-31protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025888960.14e-31protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7HR271e-41A0A3Q7HR27_SOLLC; Uncharacterized protein
STRINGSolyc08g076330.1.11e-45(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-12FAR1 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]