PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g066660.1.1
Common NameLOC101254925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 219aa    MW: 23916.7 Da    PI: 5.8372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g066660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173080155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Solyc08g066660.1.1 30 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 80
                        579****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-113080IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213189IPR016177DNA-binding domain
PROSITE profilePS5103222.5373188IPR001471AP2/ERF domain
SMARTSM003802.2E-333194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-303189IPR001471AP2/ERF domain
CDDcd000182.67E-303290No hitNo description
PRINTSPR003674.3E-93243IPR001471AP2/ERF domain
PRINTSPR003674.3E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNSVAAQDNK NAEIISNKSI KRNRDSSKHP VFRGVRMRNW GKWVSEIREP RKKSRIWLGT  60
FPNPEMAARA HDVAALSIKG NSAILNFPEL AGLLPRPATL SPRDIQAAAA KAAAMDKFDD  120
DNNNNNNNND NTSPNNSTSS TSSNMSTSSS LSSLVSAIDL ATSEELTQII ELPKLGTSFE  180
LKNDFVFADC SAMETGWLYP EDGGMISTCF DPSLLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-182689973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g066660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245167.11e-159dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7HNL61e-158A0A3Q7HNL6_SOLLC; Uncharacterized protein
STRINGSolyc08g066660.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-57ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]