PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g059770.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 154aa    MW: 17444.8 Da    PI: 9.6863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g059770.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-061638123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +C+++F+++  L  H+r+H
  Solyc08g059770.1.1 16 FQCRYCDEVFTSSQGLGGHQRKH 38
                        89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-61542No hitNo description
PfamPF139126.7E-71540IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-41638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4291643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MANQGLTMNP AGIWYFQCRY CDEVFTSSQG LGGHQRKHMP QGTWKKGESH EKKFCPSDEI  60
SDLYHRLGKR KSTPTVLPSE GRFYRSRSKR NLVHPRSTFD KPQQATVLEK PASTPTPNPF  120
LIEANYFIHF VKQMGINDDM NVGLATKDDI SIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RSRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g059770.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7HP221e-113A0A3Q7HP22_SOLLC; Uncharacterized protein
STRINGSolyc08g059770.1.11e-114(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]