PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g029090.2.1
Common NameLOC101264140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 585aa    MW: 66127.8 Da    PI: 9.2944
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g029090.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-12594198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        ffk+ ++++++k++   +p +f+ ++g +      + le ++g  W+v+l  +++ g+ +l +GW++F +   +  g f++F+++g+s f   
  Solyc08g029090.2.1  5 FFKIILSPHASKLN---IPDEFVIKYGAD--LRDVVFLEVPTGAIWKVEL-LQNSNGTKYLNNGWNQFKEYYSIAIGYFLLFQYNGNSHF--S 89
                        78888888888776...*********877..445788999**********.566666689**************************9999..8 PP

                        EEEE- CS
                  B3 94 vkvfr 98
                        v +f+
  Solyc08g029090.2.1 90 VCIFD 94
                        88887 PP

2B358.11.6e-18482579199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                         f   ++p++v+++ +l +p +f+++  ++  e++ + l+ ++grsW+ kl ++ +s+   + ++GW++Fv +n+Lke D++vF+l++  + 
  Solyc08g029090.2.1 482 FTVSMLPAYVSRNFQLEIPADFFKKRVNE--EETIVNLRVSNGRSWRAKL-FDIQSNCpKMESSGWRDFVIDNNLKEHDTCVFELNDGiEP 569
                         677899*****************887544..5568***************.544444448999**********************988888 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                           l v++fr+
  Solyc08g029090.2.1 570 MLLDVTIFRA 579
                         8888888886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-19296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.688296IPR003340B3 DNA binding domain
CDDcd100177.19E-15394No hitNo description
SuperFamilySSF1019363.34E-19396IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-10594IPR003340B3 DNA binding domain
SMARTSM010191.1E-12596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-20479580IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20479579IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-19480578No hitNo description
PfamPF023623.3E-16482579IPR003340B3 DNA binding domain
SMARTSM010196.7E-14482580IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057482580IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MPPQFFKIIL SPHASKLNIP DEFVIKYGAD LRDVVFLEVP TGAIWKVELL QNSNGTKYLN  60
NGWNQFKEYY SIAIGYFLLF QYNGNSHFSV CIFDLSASEI EYLSGPNEHE PPVSRPNCLA  120
ERHREKPDVG EDLTYATQKR KKSKRNGHSN EVVDPSTSKV TTTNQHRTVD CRYPLRSKQR  180
KDVKIEKGDV EEGHCNEALD PSTSKVHSKK RTAASLDASN CRYPLRSKQL KEVKVVKGDV  240
EDHCNKIHLV ADPSATKMTT TVRHHEKKTS ASFDTSHCRY PLRNKQLKEV KPGKTNAEKD  300
LLYVAQKAKR KKANNVKLEK GDAEERSKVG DPSASTTTNQ HNEKKTTTSL DASHCRCPLR  360
SKQHKEVKLE QWEAGGNMHN KTPVADSPYC RSQNPSLPAS SPSCQPVRVK LEKPDNLFCA  420
AEKVKGRETN NVKLDTGDLE GNLVAASYKG KYSTASEMTV LGKKKMLPSE TQNRDMYFNP  480
HFTVSMLPAY VSRNFQLEIP ADFFKKRVNE EETIVNLRVS NGRSWRAKLF DIQSNCPKME  540
SSGWRDFVID NNLKEHDTCV FELNDGIEPM LLDVTIFRAT TPVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.241090.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g029090.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0093590.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0054I14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244892.10.0uncharacterized protein LOC101264140
TrEMBLA0A3Q7HK770.0A0A3Q7HK77_SOLLC; Uncharacterized protein
STRINGSolyc08g029090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]