PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g008600.2.1
Common NameLOC101265943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 453aa    MW: 51296 Da    PI: 6.9605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g008600.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12273317554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Solyc08g008600.2.1 273 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLGDAVTYINEL 317
                         899**********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-4818185IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.74E-14266322No hitNo description
PROSITE profilePS5088816.463268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-17272339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-16273330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10273317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-15274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MENLNISTSS TPSQPNTLQK TLQYIIHNRQ EWWVYAIFWQ ASKDVNNRLI LSWGDGHFRG  60
TKDTTGSTKT GHGQYHQFQK KFGFNDISET NNNVTDTEWF YMVSMPQCFV ADDDLVIRAY  120
TSASHVWLAS YYELQIYNCE RAKEANLHGI RTIVCISTTS GVVELGSSDV IQENWEFVQF  180
IRSLFGSNNN MNTTSHLPVN QVTLGDDHKV AKCGSNIIVK QEMTIGNLLS ESGISDFEND  240
DSLTINNVMN GSIKRAKKGD SSHIRREMAM DVHVEAERKR REKLNHRFYA LRSVVPYVSK  300
MDKASLLGDA VTYINELKAK IKNLESKLIE PQKKHILMEQ HDSHSASSTI VTDHGANNKS  360
LFSSNGVRNG MEIEVKIIGS EGVIRVQSLD MNYPCTRLMN AMKEMKFQIY HASISSVKDL  420
MLQDIVIRVP EEFSNEETLK SAIISKLSVM EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-29161887195Transcription factor MYC3
4rqw_B1e-29161887195Transcription factor MYC3
4rs9_A1e-29161887195Transcription factor MYC3
4yz6_A1e-29161887195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281ERKRRE
2277282RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g008600.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244656.10.0transcription factor MYC2-like
TrEMBLA0A3Q7HIE60.0A0A3Q7HIE6_SOLLC; Uncharacterized protein
STRINGSolyc08g008600.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-69bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]