PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g008500.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 215aa    MW: 23750.5 Da    PI: 5.2869
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g008500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof43.47.4e-1440713363
              zf-Dof 33 CkaC.rryWtkGGalrnvPvGggrrknkksss 63
                         k+C rryWt GG+lrn+P+Gg +rk+kksss
  Solyc08g008500.2.1 40 LKNCpRRYWTDGGSLRNIPIGGVSRKSKKSSS 71
                        5899799*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.6E-93968IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-44164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDTSQWPQGI VVKTMEEMKI PKNTNTRKIR PQQQQNDEAL KNCPRRYWTD GGSLRNIPIG  60
GVSRKSKKSS SINIMKNNII SPKVQDIINN NNNKGVNQDL NLDFSSDFKI ISELIQVPNN  120
NSFMPIMPNI SDPNSIYLFS SNLDHGLIGS SSISDGGYEC NNIIQDLQVC TSTTTSGGIL  180
FPFEDLKQVS NTSEQSRDGE SSTNGYWDVI LGGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g008500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888072.11e-154dof zinc finger protein DOF4.6-like isoform X2
TrEMBLA0A3Q7HL541e-103A0A3Q7HL54_SOLLC; Uncharacterized protein
STRINGSolyc08g008500.2.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-11Dof family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]