PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g007830.1.1
Common NameLOC101248897
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 230aa    MW: 26020.8 Da    PI: 4.7213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g007830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-193687156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        + y+GVr++  +++Wv+e+r+pse   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Solyc08g007830.1.1 36 PVYRGVRRRD-NNKWVCEVREPSE---QKRIWLGTYPTPEMAARAHDVAALALRGN 87
                        68*****998.8*********976...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-143686IPR001471AP2/ERF domain
SMARTSM003801.4E-2637100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-293796IPR001471AP2/ERF domain
PROSITE profilePS5103221.7463794IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-213796IPR016177DNA-binding domain
CDDcd000181.27E-273896No hitNo description
PRINTSPR003673.5E-73849IPR001471AP2/ERF domain
PRINTSPR003673.5E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNSDHFRVQD EGVFLLASSQ PKKRAGRKKF KETRHPVYRG VRRRDNNKWV CEVREPSEQK  60
RIWLGTYPTP EMAARAHDVA ALALRGNLAT LNFADSSWRL TVPISKDPEE LRKAAIQAAE  120
ELVGVGYMNE EINYIEENIA IGGANGSDNS NLVGNEVNNN NNIQNMEMGN ISCYNNWGDN  180
NEMLEIEGST WQEKMSEGHL FSPTPHYDSC FSWDDVESDG EVSLWSYNM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g007830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244599.11e-172dehydration-responsive element-binding protein 1F-like
TrEMBLA0A3Q7HI471e-170A0A3Q7HI47_SOLLC; Uncharacterized protein
STRINGSolyc08g007830.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-42ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]