PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g007820.1.1
Common NameLOC104648613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 245aa    MW: 27407.7 Da    PI: 4.646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g007820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1849100156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Solyc08g007820.1.1  49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100
                         68*****887.8*********954...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-134999IPR001471AP2/ERF domain
SMARTSM003802.2E-2750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2850109IPR001471AP2/ERF domain
PROSITE profilePS5103221.27250107IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2150109IPR016177DNA-binding domain
PRINTSPR003672.5E-75162IPR001471AP2/ERF domain
CDDcd000186.61E-2951109No hitNo description
PRINTSPR003672.5E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNNDSSLYSS DINPLSATTP SNEEGILLLA SSQPKKRAGR KKFKETRHPV YRGVRRRNNN  60
KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WGLPVPASKD  120
PKDIRQAAVM AAQAFSQDTE LVGVDYMNEE VNSNTIDEIK YQEIDIARAN DGSSSDFGAK  180
ELCIDMENIL CCNWGEDNDM LEMEGWQEKM AKGLLFSPTP RLGSCFSWDD VESDVEVSLW  240
SYSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.64560.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g007820.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8476529e-14Solanum lycopersicum carboxylesterase 1 (CXE1) gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010324621.10.0dehydration-responsive element-binding protein 1E-like
TrEMBLA0A3Q7HI060.0A0A3Q7HI06_SOLLC; Uncharacterized protein
STRINGSolyc08g007820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-43C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]