PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g007170.1.1
Common NameLOC104648628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 409aa    MW: 45773.9 Da    PI: 9.3922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g007170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.22.5e-1932123187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ +     +    +++ qC++k+e+l++ry+++k+++ +  t +  s++ +fd+++
  Solyc08g007170.1.1  32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDNMD 122
                         8***********************************9977766667788999*******************99987888899*******98 PP

            trihelix  87 a 87 
                         a
  Solyc08g007170.1.1 123 A 123
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1931124No hitNo description
PROSITE profilePS500906.8993393IPR017877Myb-like domain
SMARTSM005951.1E-940129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN  120
MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNGIDSPP  180
NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEPP HDVEFSSGYR MKNGISMKAK  240
RTGRIIGDVN GFDRGGGNFV MNPNFDCDEG SEYNGSNASD GFHIRNMGVS SSRRSYNSGN  300
VEQQPNLDSR FSPGLSKFGK KGGGGGGLGM KRGRDPVEEM VLSIKLLGEG FMKMEKMKME  360
MAKEVEQMRM EMEMKRNEMI LESQKQIVEA FVKVLGEVHK NKNAKPES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010324674.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLK4CIK40.0K4CIK4_SOLLC; Uncharacterized protein
STRINGSolyc08g007170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127741617
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-31Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]