PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g007020.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 184aa    MW: 20817.3 Da    PI: 9.3615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g007020.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.42.8e-235812954122
                 NAM  54 eekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                         ++ +w+fF +rdkky++g+r+nra   tk+gyW+atgkd +v+ ++ e+vg +ktLvfy+gr+p g ktdW+
  Solyc08g007020.1.1  58 SRYRWFFFYPRDKKYSNGSRANRAiraTKAGYWNATGKDGKVVFHEPEVVGYRKTLVFYQGRSPLGDKTDWM 129
                         3349***************9999645588***************9**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.70310157IPR003441NAC domain
PfamPF023655.2E-955129IPR003441NAC domain
SuperFamilySSF1019413.79E-2156129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRGGEKGFCW WFGFRQRRDS GGCDSISLAS RTMKRGGGGN DALEMVEISR TEIFPAKSRY  60
RWFFFYPRDK KYSNGSRANR AIRATKAGYW NATGKDGKVV FHEPEVVGYR KTLVFYQGRS  120
PLGDKTDWMD DECPRYEFPN VASWQPNDRI EVTTSSTSPL KFGEVEPSGD LSSFGCVSPY  180
SIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-162313226139NO APICAL MERISTEM PROTEIN
1ut4_B4e-162313226139NO APICAL MERISTEM PROTEIN
1ut7_A4e-162313226139NO APICAL MERISTEM PROTEIN
1ut7_B4e-162313226139NO APICAL MERISTEM PROTEIN
3swm_A5e-162313229142NAC domain-containing protein 19
3swm_B5e-162313229142NAC domain-containing protein 19
3swm_C5e-162313229142NAC domain-containing protein 19
3swm_D5e-162313229142NAC domain-containing protein 19
3swp_A5e-162313229142NAC domain-containing protein 19
3swp_B5e-162313229142NAC domain-containing protein 19
3swp_C5e-162313229142NAC domain-containing protein 19
3swp_D5e-162313229142NAC domain-containing protein 19
4dul_A4e-162313226139NAC domain-containing protein 19
4dul_B4e-162313226139NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g007020.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760809.19e-28PREDICTED: protein ATAF2-like
RefseqXP_016501877.19e-28PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A3Q7HHL91e-95A0A3Q7HHL9_SOLLC; Uncharacterized protein
STRINGSolyc08g007020.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2877622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.13e-26NAC domain containing protein 71
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]