PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g005900.2.1
Common NameLOC101253209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 327aa    MW: 37790 Da    PI: 9.0479
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g005900.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.8e-2053135286
            trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W+ qe+++ i++r e+e +++++k    k lWe v++++ erg++rs++qCk+kw+ l +ryk  ++++ ++      ++pyfd+l+
  Solyc08g005900.2.1  53 WSTQETRDFIAIRGELEMEFSSAKrsNLKSLWEIVAARINERGYRRSAEQCKSKWKTLINRYKGKETSDPDN----GGQFPYFDELH 135
                         ********************986522669************************************9999984....4469*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.63145111IPR017877Myb-like domain
SMARTSM007170.003449113IPR001005SANT/Myb domain
PfamPF138379.9E-2152137No hitNo description
CDDcd122036.68E-1953118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFGGSNEKLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSTQETRD  60
FIAIRGELEM EFSSAKRSNL KSLWEIVAAR INERGYRRSA EQCKSKWKTL INRYKGKETS  120
DPDNGGQFPY FDELHALFSS NMNNVHRVPI ESEAGSQQAR KRPRGTSRDR SSEEISEDEE  180
GYACESDEVK LGRSNVAPKK KPEKEKRPRT SNAEKASRQA SFGSSINNNT GRAVDNIQEM  240
LKEFFQHQLR IEMQWRETTE KRAREREAFE QEWRSSMEKL ERDRMMIEQS WREREEQRRT  300
REETRAEKRD ALLTTLLNKL IGENHP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164ARKRPRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.205450.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132760.0Lycopersicon esculentum clone 134854R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244448.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLK4CI790.0K4CI79_SOLLC; Uncharacterized protein
STRINGSolyc08g005900.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-28Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]