PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g064000.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 221aa    MW: 25221.2 Da    PI: 3.9987
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g064000.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.82e-101292151298
              DUF573  12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                         ++++L+++ d++     sp+    ++   +vk+s  ++k+s++ l eKi  L k f++ +++   g++p+++++ d++if+ls++iWg+
  Solyc07g064000.1.1 129 DLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 215
                         489********988777666558999999999998469***********************9..***********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLPAIGRTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEED MENLGSGNNV  60
NHQNSEENGS GNQESYDENH TSWLVVVEDD EDEEEERRRA AEKGKQPMSD GGGISITELH  120
DEDEDHHLDL AILKAMCDYE CIIRNSPQLS SFNNRLVYVK DSFPDLKMSR EALEEKIIAL  180
CKNFNDVREQ LGDDPRMDRP IDREIFNLSM IIWGTKVIPR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103560.0Solanum lycopersicum chromosome 7 clone C07HBa0130B18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4CH831e-160K4CH83_SOLLC; Uncharacterized protein
STRINGSolyc07g064000.1.11e-160(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1722155
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]