PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g063840.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 157aa    MW: 18606.6 Da    PI: 4.992
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g063840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.53.6e-13701541297
              DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                          +++L+ + d+k+ktg  p+    ++ +f+  si ++++s++ lv+Ki  +K+ +++ ++   +g++p ++++ d++if+ls+++Wg
  Solyc07g063840.1.1  70 SLAILRSMWDYKSKTGDFPYPPSIELLNFIMYSIpNLTISREKLVKKITTFKNNYNDAWEL--DGDHPGLDRPVDREIFNLSMRLWG 154
                         589******************99999999999984589***********************..***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-970154IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLHENDRKRL RSDEKEESDE TGEGKTEELD PNEDEKERRR RRAVKKGKQS MSGRQSDADY  60
YDYDYDYNQS LAILRSMWDY KSKTGDFPYP PSIELLNFIM YSIPNLTISR EKLVKKITTF  120
KNNYNDAWEL DGDHPGLDRP VDREIFNLSM RLWGDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2460093e-06Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46g19 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630430.15e-26PREDICTED: ABC transporter F family member 4-like
TrEMBLK4CH671e-112K4CH67_SOLLC; Uncharacterized protein
STRINGSolyc07g063840.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.12e-08DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]