PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g055100.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 430aa    MW: 48037.2 Da    PI: 10.3089
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g055100.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.42.2e-14100190186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  +++Liea  ++  +l+rg+l+ ++Weev++++     + ++  r+ +qCk++++ l+k+yk +++  ++   +  s +p+f++l+
  Solyc07g055100.2.1 100 CWSEAATHTLIEAWGSRYLELNRGNLRHQHWEEVADAVnaqhgHIKKQYRTDIQCKNRIDTLKKKYKIERAKVSQSPGRYISAWPFFSSLN 190
                         7*************************************96655444456899*******************99999889999*****9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2598190No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MFRRHNHTDN PSLITSSNPN SSTIFHPSAA DAAVVSHSGT MSDDDHLAPP FSNHNSPSPS  60
HSRSPLPGRD NKLLALPPPP MLTPASMSAR TPVFPAREDC WSEAATHTLI EAWGSRYLEL  120
NRGNLRHQHW EEVADAVNAQ HGHIKKQYRT DIQCKNRIDT LKKKYKIERA KVSQSPGRYI  180
SAWPFFSSLN VLIGVTAKAS PPPPATTLPP QRRMPPTQAT SPPQWRAPPP EMSPLQWRSP  240
PPEMLPFQWR TPPVPPPPLL GIPVGPRSKR PAAAIDYKVS RRNFSAMAAA AAAASDDSDE  300
EKEESETSSV AASAMAIATC RIKRKKSGGL VEGYKMLAES IGKFSEIYER VEMAKQRQMI  360
ELEKQRMQFA KDLEIQRMKL IMESQVHLEK LKRSKTQLRR WFGGMLCNLM RGSLCKPYTC  420
IYILISVFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243285.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLK4CG490.0K4CG49_SOLLC; Uncharacterized protein
STRINGSolyc07g055100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-42sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]