PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g052830.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 321aa    MW: 35723.9 Da    PI: 4.848
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g052830.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573828.5e-26147221478
              DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkep 78 
                         + lws++D+++lL+G++++k+ +g++p +d++af+ef+k++++++vsksql+eK++rLKkKf ++ ++++++ e 
  Solyc07g052830.2.1 147 RFLWSDDDQLALLKGIVEYKEVEGMEPNADMSAFHEFIKGKLQVEVSKSQLSEKLKRLKKKFLTNDDEKHKEVEE 221
                         569***********************************************************9998874333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-19149216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALKIKSRLV DQPPSASSSE DQELVEESHE EEQQQSGEGE GEEESGEETE EPKTAHPVVK  60
RFLTQKLQLS SESGSENGSG SESEAESGHS LPSPSASDFT VKPSVPAKAA APSKSVAKRP  120
QKAQKEKGRK KPKIAEEEEK KSAATPRFLW SDDDQLALLK GIVEYKEVEG MEPNADMSAF  180
HEFIKGKLQV EVSKSQLSEK LKRLKKKFLT NDDEKHKEVE EQVAVKEVVR EDIVKDDHQD  240
FQSEYPRLAA SFESMAGMSA MYPNGSSFLK EKLSLIATDK AKELEEKWKK LEDDEAALMV  300
KRLDFIAEHY KLVVDAMRGN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.53030.0fruit| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535910.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence
GenBankAC2536110.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence
GenBankBT0136800.0Lycopersicon esculentum clone 132502R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170368.11e-135PREDICTED: neurofilament heavy polypeptide-like isoform X1
RefseqXP_015170369.11e-136PREDICTED: neurofilament heavy polypeptide-like isoform X2
TrEMBLK4CFI20.0K4CFI2_SOLLC; Uncharacterized protein
STRINGSolyc07g052830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1074824
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.19e-15DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]