PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g045520.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 654aa    MW: 75556.1 Da    PI: 6.8527
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g045520.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-2432123190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHe
  Solyc07g045520.2.1  32 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHE 121
                         69********************8888.******************************************998766789************* PP

                FAR1  89 la 90 
                         l 
  Solyc07g045520.2.1 122 LL 123
                         96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2232123IPR004330FAR1 DNA binding domain
PfamPF105512.3E-23256347IPR018289MULE transposase domain
PROSITE profilePS509669.965527562IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-6535561IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTKSETASSS SQDVVFTPYV GQIFKSDDEA FEYYSNFARK NGFSIRKARS TESQNLGIYR  60
RDFVCYRSGF NQPRKKANVE HPRDRKSVRC GCDAKLYLTK EIVDGVAQWY VSQFSNVHNH  120
ELLEDDQVRL LPAYRKIQEA DQERILLLSK AGFPVNRIVK VLELEKGVQP GQLPFIEKDV  180
RNFVRTCKKT VQENDALITE KRENDLLELL EACKASEQKD EGFVYSFTTD ENGRVENIAW  240
SYGHSLQAYS FFGDAVIFDT TYRSITYNML FGVWFGIDNH GNALFLGCVL LQDETSQSFS  300
WALQSFVRFM RGRQPQTIVT DIDSGLRDAI ASEMPTTKHV ICIWQVLSKL SSWFSLPLGL  360
QYPDFKSEFD MLCRLENVED FEHQWNQLVA RFGLGSDKHI ALLLSYRASW QISYMRNFFL  420
ARTMSIEYWK LVETFMKNIL SPQSSLLLFF EQVGLACNFG NHKKEKQLYM PAKTCLPLEE  480
HARSILTPYA FNIMQHEVML SMQYAITEMA NSTYLVRHYK KMEAECLVIW IPEDEQVHCS  540
CKEFEHSGIL CRHSIRVLVS KNYFQVPEKY FPLRWRPESS LAPLDDSVIQ SSGNKYSQVF  600
HALSGSLYSE SFISKQRFNY VNRELKQILE HVQKMPTVDE VAASSAPISV SEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.252750.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g045520.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536330.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323893.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_025887813.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A3Q7HDD80.0A0A3Q7HDD8_SOLLC; Uncharacterized protein
STRINGSolyc07g045520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]