PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g045030.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 332aa    MW: 38447.5 Da    PI: 9.3512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g045030.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.1e-51311601128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l pGfrFhPtdeelv +yLk+kve+k+++l + ikevdiyk++PwdLpk +    ++kewyfFs r +ky+++ r+nr+t sg+Wkatg d
  Solyc07g045030.2.1  31 LLPGFRFHPTDEELVGFYLKRKVENKRIKL-DLIKEVDIYKHDPWDLPKVMGRvgDNKEWYFFSMRGRKYKNSVRPNRVTGSGFWKATGID 120
                         579***************************.99***************6443343677********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+v+s+ ++  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Solyc07g045030.2.1 121 KPVHSQsNELCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 160
                         *****844445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5430194IPR003441NAC domain
PROSITE profilePS5100553.22931195IPR003441NAC domain
PfamPF023652.0E-2533160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSEKRVEKME NTIVCESKIK NSDDDEENDL LLPGFRFHPT DEELVGFYLK RKVENKRIKL  60
DLIKEVDIYK HDPWDLPKVM GRVGDNKEWY FFSMRGRKYK NSVRPNRVTG SGFWKATGID  120
KPVHSQSNEL CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPIWKTNTSN GQHLPNLKNI  180
AAEAEVWTLC RIFKRISNYK RFTPDWKQQQ PVVKQSFVDT SSKACSVQSE ISDDQSNNVI  240
NFKKMAFPQK SIMNASCGGN LNYQVDQRNS YYNNSQLITT MPDQSPFTSS NSIFWNTRAE  300
DQEYLFSHGN WDELKSVVDL AIDPRSLFGF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-473120117171NO APICAL MERISTEM PROTEIN
1ut4_B3e-473120117171NO APICAL MERISTEM PROTEIN
1ut7_A3e-473120117171NO APICAL MERISTEM PROTEIN
1ut7_B3e-473120117171NO APICAL MERISTEM PROTEIN
3swm_A3e-473120120174NAC domain-containing protein 19
3swm_B3e-473120120174NAC domain-containing protein 19
3swm_C3e-473120120174NAC domain-containing protein 19
3swm_D3e-473120120174NAC domain-containing protein 19
3swp_A3e-473120120174NAC domain-containing protein 19
3swp_B3e-473120120174NAC domain-containing protein 19
3swp_C3e-473120120174NAC domain-containing protein 19
3swp_D3e-473120120174NAC domain-containing protein 19
4dul_A3e-473120117171NAC domain-containing protein 19
4dul_B3e-473120117171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.228020.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g045030.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153621e-13Solanum lycopersicum chromosome 2 clone C02HBa0027B01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323924.20.0transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK551e-90NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3Q7HA850.0A0A3Q7HA85_SOLLC; Uncharacterized protein
STRINGSolyc07g045030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-89NAC domain containing protein 42
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]