PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g045000.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 177aa    MW: 19954.8 Da    PI: 5.5191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g045000.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.61.4e-081193654
             G2-like 36 mkvkgLtlehvkSHLQkYR 54
                        m vkgL ++hvkSHLQ+YR
  Solyc07g045000.2.1  1 MAVKGLKISHVKSHLQMYR 19
                        89***************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-7121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAVKGLKISH VKSHLQMYRN LKERGNLNMV RSVNNFHEET PQFSWSSPQH VCEALLEHGP  60
SKSSKQIDPG SDKLPNYKAI INAYIAENNI YCYDYQEAQG SLSSGMTKEE EDDDGGGGGG  120
PSSEIYEFSH EREINFWPLN DYNHQNSQYD SSKKQVLNST KDNSHINLDL SISSYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.84040.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g045000.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323925.11e-129uncharacterized protein LOC101246548 isoform X2
TrEMBLA0A3Q7HA811e-127A0A3Q7HA81_SOLLC; Uncharacterized protein
STRINGSolyc07g045000.2.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]