PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g043580.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 496aa    MW: 54712.9 Da    PI: 7.1166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g043580.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17313359455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Solyc07g043580.2.1 313 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 359
                         6*************************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20312386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-18312363No hitNo description
PfamPF000101.2E-14313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-20313367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGFDHELVEL LWRNGEVVLH SQTHKKQPGY DPNECRQFNK HDQPTIRVAG NQTNLIQDDE  60
TVAWLNCPID DSFDKEFCSP FLSDISTNPH LGEEPDKSIR QSEDNNKVFK FDPLEINHVL  120
PQSHHSGFDP NPMPPPRFHN FGSAQQKHHI VGGDQKGVNF PPPIRSSNVQ LGGKEARSNL  180
MLQDIKEGSV MTVGSSHCGS NQVDTSRFSS SANRGLSAAM ITDYTGKISP QSDTMDRDTF  240
EPANTSSSSG RSGSSYARAC NQSTATNSQG HKRKSRDGEE PECQSKADEL ESAGGNKSAQ  300
KSGTARRSRA AEVHNLSERR RRDRINEKMK ALQELLPHST KTDKASMLDE AIEYLKSLQM  360
QLQMMWMGSG MASMMFPGVQ HYISRMGMGM GPPSVPSMHN AMHLARLPLV DPAIPLTQAA  420
PNNQAAAMCQ NSMLNQVNYQ RHLQNPNFPD QYASYMGFHP LQGASQPINI FGLGSHTAQQ  480
TQQLPHPTNS NAPAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.18640.0fruit| leaf| root| stem| trichome
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0Lycopersicon esculentum clone 132330F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243631.10.0PREDICTED: transcription factor PIF4
RefseqXP_010323941.10.0PREDICTED: transcription factor PIF4
RefseqNP_001294937.10.0transcription factor PIF4
TrEMBLK4CEL50.0K4CEL5_SOLLC; Uncharacterized protein
STRINGSolyc07g043580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-48phytochrome interacting factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]