PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g042230.1.1
Common NameLOC101246841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 168aa    MW: 18769.2 Da    PI: 8.485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g042230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-201665255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa  +l+g
  Solyc07g042230.1.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYDTAEEAARAYDAAVVCLRG 65
                        69*****99.*******999854...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-301675No hitNo description
PfamPF008471.5E-131665IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221674IPR016177DNA-binding domain
PROSITE profilePS5103223.3931673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-311674IPR001471AP2/ERF domain
SMARTSM003801.4E-341679IPR001471AP2/ERF domain
PRINTSPR003673.1E-101728IPR001471AP2/ERF domain
PRINTSPR003673.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVRAKVKKEK KVKGDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYDTAE EAARAYDAAV  60
VCLRGPSAMI NFPDDPPLIS CDADNYKLSP SEIQVKASRH ARSSSTRVSE ELAAAAATVV  120
VDHHHSRSAA VESVFFRDDL EFGCSSLDHG EVVLHDDLFD SARMWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1816811480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.99240.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g042230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1923696e-11Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds
GenBankAY2755546e-11Lycopersicon esculentum ethylene response factor 2 mRNA, complete cds
GenBankAY5593146e-11Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds
GenBankBT0141266e-11Lycopersicon esculentum clone 133235F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243693.11e-120ethylene-responsive transcription factor ERF018-like
TrEMBLA0A3Q7HBU81e-118A0A3Q7HBU8_SOLLC; Uncharacterized protein
STRINGSolyc07g042230.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-25ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]