PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g017310.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 365aa    MW: 40999.2 Da    PI: 4.6637
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g017310.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.61.7e-1052802755
             G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                        A Pk++ elm+++ L+ +++ SHLQkYRl
  Solyc07g017310.1.1 52 ACPKKVHELMNMPELSKKQISSHLQKYRL 80
                        89**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.17E-55184IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-95280IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-95284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKVNSIEVAL GGLRSSGLSF DLLLTDIHML KMDVFQFQQD IAKEFDISIC YACPKKVHEL  60
MNMPELSKKQ ISSHLQKYRL TLDKKPNPKV VFDSSKTTSG NANQLSITTD NISVLAPQVM  120
TKNLNNVGPD TELDLRNFMS YYEKDRNFSN ILSRHLNQKP YKMQGNHEGI NADGISLQLG  180
NVLQNSNLEQ GKYASITAEE RPLHSSTVSP NLSLQQEIYG GVTAEDALFD HLDVPSNSEI  240
RSGDYESFIA EDWLFLNSLF LDHELEQANY EGLTTKEGSL QLCNDPPNTT LEDLAPDEYN  300
IECANGFWDN AKVVQIGVGR KSMMCAQPKE KFDFVWNFLL PNSAMMKRIG RGLFQNMEDG  360
FDGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g017310.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536591e-146Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence
GenBankAC2536661e-146Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence
GenBankAC2539891e-146Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774110.11e-149two-component response regulator ARR14-like
STRINGSolyc07g017310.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1581437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-07response regulator 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]