PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g009560.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 397aa    MW: 44388.1 Da    PI: 4.6173
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g009560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.68.7e-11841122755
             G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         A Pk++ elm+++ L+ ++++SHLQkYRl
  Solyc07g009560.1.1  84 ACPKKVHELMNMPELSKKQIASHLQKYRL 112
                         89**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.9E-9482No hitNo description
SuperFamilySSF521722.42E-7681IPR011006CheY-like superfamily
CDDcd001561.46E-51081No hitNo description
SuperFamilySSF466894.48E-583116IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-984112IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-984116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEVEKKGRIL VVDDINCHLT TIASLKYSQF EVMTVNSIEV AVGGLRSSGL SFDLLLTDIH  60
MLKMDVFQFQ QDIAKEFDIP ICYACPKKVH ELMNMPELSK KQIASHLQKY RLTLDKKPNP  120
KVVLDSSKTT SGNANQLSIT TDNISALAPQ VMTKNLNNAG PDTEPDLRNF VSDYEKDRNF  180
SNILSRHLNQ KPYKMQGNYE GINADGISLQ LGNVLPNSNL EQGKYASITA EERPLHSSTV  240
SPNLSLQQEI YGGVTTEDAL FDHLDVPSNS EIESGDYESF TAEDWSFLNS FFLDHELEQA  300
IHEGLTTKEG SLQLCNDPPI TTLEDLAPDE YNVECANGFW DNAKVVQVGV GRKSMMCAQP  360
KEIFDFVWNF LLPNPAMMKR IGRGLFRNMK DGFDGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g009560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536591e-127Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence
GenBankAC2536661e-127Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence
GenBankAC2539891e-127Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774110.11e-153two-component response regulator ARR14-like
STRINGSolyc07g009560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1581437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-08response regulator 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]