PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g006840.1.1
Common NameLOC104648245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 484aa    MW: 55513.5 Da    PI: 4.7773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g006840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.92.2e-41561842128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtd el+++yL++k+++ +l+  + i e++iyk+eP ++ +  k +++e+ wy F++rd+ky++g+r+ r t +gyWkatg dk
  Solyc07g006840.1.1  56 PPGFRFHPTDYELIKHYLERKLANLPLHP-NKIYELNIYKYEPDTIAAqlKPTTTENIWYVFTPRDRKYPNGERPDRCTWNGYWKATGIDK 145
                         9*************************999.77**************8523445577799******************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++  + +++g ++ Lv+y g+ p+g+ktdW+mhey +
  Solyc07g006840.1.1 146 IIVDDdNISKIGSRRALVYYIGKPPNGKKTDWIMHEYMI 184
                         ***9856677***************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001803648IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019419.02E-4848210IPR003441NAC domain
PROSITE profilePS5100548.63855211IPR003441NAC domain
PfamPF023651.1E-2256183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MENHNTSLTN NESKDNLISA NHINELPISA VFSNKDSNGD QIMSPEDVEA LMNKFPPGFR  60
FHPTDYELIK HYLERKLANL PLHPNKIYEL NIYKYEPDTI AAQLKPTTTE NIWYVFTPRD  120
RKYPNGERPD RCTWNGYWKA TGIDKIIVDD DNISKIGSRR ALVYYIGKPP NGKKTDWIMH  180
EYMIPKITIP NSSTPRNPKL DEWVLCKFYN RNDVITSGST RRKRKRGDHD PIIDEVHQDS  240
VRNSFTNFNN NDNHAVMLSE GTSLGNDPTS YFNYNYNHAM MFFQGTDQDS MRKDHTNYDN  300
NYNHAMTLHP QVHMEVPTLP QCPNMPFLSN YQNYVSDHFN DYSIVDPPLP LRIEPTPTNN  360
SIEHDYTMNN VGVGGDYGEY SEVHDQYYVS DQYIVDNYES QYDTNNFVNG ETTTSNNFVN  420
GETTTSNNFV NGETTTTSNN FVNGETTNSN NFANGETTNS DNYETNTSNN FVNGETSTSK  480
EDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-455521217166NO APICAL MERISTEM PROTEIN
1ut4_B4e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_A4e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_B4e-455521217166NO APICAL MERISTEM PROTEIN
4dul_A4e-455521217166NAC domain-containing protein 19
4dul_B4e-455521217166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225RRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g006840.1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877730.0Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete sequence
GenBankAF4118080.0Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323471.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLK4CBF50.0K4CBF5_SOLLC; Uncharacterized protein
STRINGSolyc07g006840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139361213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-49NAC domain containing protein 25
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]