PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083590.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 580aa    MW: 65439.5 Da    PI: 7.0303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.5e-20446542295
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+ +gr+vlpkk ae+h  +++++ ++ + +ed    r+W++k+++  ++ks++y+l+ ++ +Fv angL+egDf+v++   +
  Solyc06g083590.2.1 446 QKVLKQSDVGHLGRIVLPKKEAESHlpQLETRDGISIAMEDIGTcRVWNMKYRFwpNNKSRMYLLE-NTGDFVVANGLQEGDFIVIY--AD 533
                         79*************************99999*********6666*******99777777777777.********************..45 PP

                         .SEE..EEE CS
                  B3  88 .sefelvvk 95 
                          ++++++++
  Solyc06g083590.2.1 534 iKCGKYLIR 542
                         588877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-26439553IPR015300DNA-binding pseudobarrel domain
CDDcd100151.58E-34443544No hitNo description
SuperFamilySSF1019361.57E-21444538IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-18445547IPR003340B3 DNA binding domain
PROSITE profilePS508639.812445547IPR003340B3 DNA binding domain
PfamPF023623.6E-16446541IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MKRELNDVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS  60
SSTSNSLPTE QSDPSSGWAV QKSDADEQDF DTISDQECLN VMDLIDGDHE FLDPMISFFN  120
QQQKEQANEE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS  180
TKEGKKQLLR LILDWVEQHR LQKKQMREEQ SIQNSAPFNF NNPNACFYNA SFTDSSSVMT  240
GPIQGYFGDL NSNGSLFVPP YNQTMSGSST SQSWSQSQFI MANASQYNRF PENNITNNVA  300
IPDQPLFSAQ YDQYQIFDGS GERLARLGTC ATKEARKIRM ARQRRVPLHH YRHQTQNQRQ  360
ISNEKSVMMG RKINNCAISQ ANNPGNWVYW PCAAAAPPIA MVPLADTPQS LPMERSPVQS  420
QKHQKHGSTD KRQACKTEKN LKFLMQKVLK QSDVGHLGRI VLPKKEAESH LPQLETRDGI  480
SIAMEDIGTC RVWNMKYRFW PNNKSRMYLL ENTGDFVVAN GLQEGDFIVI YADIKCGKYL  540
IRGVKVRPNG AKSDGMQPAK KIVRKIAAVA SSPFAQAVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-374415451105B3 domain-containing transcription factor FUS3
6j9b_D2e-374415451105B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.97110.0fruit| root
Function -- GeneRIF ? help Back to Top
  1. SlABI3-F (full length) and SlABI3-T (truncated) have similar and distinct functionality in the abscissic acid signaling, dependent on which tissue/organ they accumulate in.
    [PMID: 23504452]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g083590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9113990.0Lycopersicon esculentum ABI3 (ABI3) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323011.10.0ABI3 protein isoform X1
RefseqXP_019069689.10.0ABI3 protein isoform X1
RefseqXP_025887097.10.0ABI3 protein isoform X1
RefseqXP_025887098.10.0ABI3 protein isoform X1
TrEMBLA0A3Q7H5E20.0A0A3Q7H5E2_SOLLC; Uncharacterized protein
STRINGSolyc06g083590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-111B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Gao Y, et al.
    Functional characterization of two alternatively spliced transcripts of tomato ABSCISIC ACID INSENSITIVE3 (ABI3) gene.
    Plant Mol. Biol., 2013. 82(1-2): p. 131-45
    [PMID:23504452]