PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083430.1.1
Common NameLOC101248117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 326aa    MW: 37625.6 Da    PI: 6.5327
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083430.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.77.2e-1940122286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  Solyc06g083430.1.1  40 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 122
                         ***********************************9966667766579*****************98766664......3599999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-1939124No hitNo description
PROSITE profilePS500906.2639100IPR017877Myb-like domain
SMARTSM005952.8E-547129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATPSSPPPL LLPPPESNQP QISPNPPIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK  60
KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR KRYRAERLKP YPNSWQYFDL  120
MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR  180
GEMGMMGVNV VADNRNVNRM VKDRNFDPMR GMRNSMNEKR KGYFENVGIN NDDDDVEEEA  240
DEEEDDVDGE GSVGGSELAA EIRGFAERFM RMESKKIEMM KETERFRMEM EKRRMEMILE  300
TQRNLIDTIN SVVGSHKKVK VAHEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408685e-10Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-35c8 map 1, complete sequence
GenBankAC2461755e-10Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34o13 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323086.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLK4CAJ80.0K4CAJ8_SOLLC; Uncharacterized protein
STRINGSolyc06g083430.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40591122
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-32Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]