PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g082520.2.1
Common NameLOC101245071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 846aa    MW: 93502.3 Da    PI: 6.8849
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g082520.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19317416198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++ 
  Solyc06g082520.2.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID- 405
                         99**************************666667778***************9989999999***9.********************887. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++lv+++++
  Solyc06g082520.2.1 406 PGGKLVMGFRK 416
                         78878888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-21314418IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-30314419IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-24315416No hitNo description
PROSITE profilePS5086311.321317418IPR003340B3 DNA binding domain
PfamPF023622.2E-16317416IPR003340B3 DNA binding domain
SMARTSM010191.7E-21317417IPR003340B3 DNA binding domain
PROSITE profilePS5105014.086541591IPR011124Zinc finger, CW-type
PfamPF074963.0E-11546588IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSVEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC  60
RTCRKPIHCG CIASKYLYEY LDYGGVTCIK CAHHLDGHSI RPIQIPGDDF PIGNLGSKSA  120
KPLGIENKID ENDFERRRFM QTNEPGQLFH TQRNDKKQDP MLPIGNVGTC FSNLNQQNIG  180
ASLFGKPDNE RPSQGVKDMY DSINQPSLNF CLSTPIGTSS SGQPFLGGDV EGREQSKTSP  240
FQQGQRARHI LPKPPKPSPT SGSESVKGMV SQARIARPPA EGRGGRSQLL PRYWPRITDQ  300
ELEQIAGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE GLPIRIQDIK  360
GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL VMGFRKATNN  420
VDMQDPQTPN LPSGNGSGET SFPGMADNFP NGGRTSDDTM NRQVPMSEKK KARNIGSKNR  480
RLLMHADDAM ELRITWEEIQ ELLRPSPTAK PNIVVVEDCE FEEYEEAPVF GKRTIFTARS  540
SGDQEQWAQC DSCSKWRRLP LHILLPAKWT CSDNIWDSRR CSCAAPDEIS PRELEALLRV  600
GKDPKRRKLV ENNEDLESSG LDALATVAAS DMGDSIGDMG EPSVGATTKH PRHRAGCTCI  660
VCIQPPSGKG KHHPTCKCNV CLTVKRRFKT LMLRKKKKQS EREAELAQAK DQVPPKDESE  720
TDGMTSGVEL LQMNHSENEH MNHSDNERNS NGDQVEEFGP GKGQLDLNCH PNRDDDMLAE  780
ATAGMSMTSL VNATNLPLEY LTQNRLESLG NSLLSQAASE SEGHHPDNGF GKTADVESGG  840
KGAKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-692954242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1601607KDPKRRK
2684695KRRFKTLMLRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g082520.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267260.0Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242480.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_010323114.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_010323115.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_010323116.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_025887548.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_025887549.10.0B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A3Q7H4D90.0A0A3Q7H4D9_SOLLC; Uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]