PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076270.2.1
Common NameLOC101246932
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 701aa    MW: 77121 Da    PI: 9.723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076270.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07601650147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Solyc06g076270.2.1 601 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 650
                         678999********************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.65E-8405493IPR029071Ubiquitin-related domain
CDDcd017690.0011413480No hitNo description
PROSITE profilePS5129415.596596655IPR017930Myb domain
SMARTSM007171.2E-7600653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10601651IPR009057Homeodomain-like
CDDcd116601.40E-16602652No hitNo description
SuperFamilySSF466891.2E-15602683IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIKRKADGNG TCHFDLLATV AGKLLGEGES  60
SPDSKGSVKG KEKGAIVKDE KVKEAEDKSL KEKSYTEGCY ERGFFISELV SQAPVVNRSL  120
SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFCSKTE REASGCGVFS  180
SCTLDTENDK QMKIELSNKA KVLTDKGTAI SSSKFPDVWD KKPSTLVTSD ENVKLSLSTY  240
PAPSRSFPVI RDNVKLAYKD DDENSGCTQP STPNKASGAA PCLRDRPIKK LLASKYWKEN  300
LKFDDEGHAN SGGKAMHVYY NRNIGYKRDG YKHQRSQRDF PFKKRKVFKC GSFSNSDGEM  360
STDGISSSPT NDLHGNASGS SKASSGGCAA VGTSVFSGGR PFLRPGDSHV KFRIKSFKVP  420
ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL  480
DALGFSLEPN PVQTSQPLGQ DCRSCVLPYE TPQPLTRCPS PSTVIHTGIH QGRSDDHTGT  540
SLSTFLESDH ESAPSPHYAA LEKISANSRA LVPLTAVNAE ALSAVPLRKP KRSEATQRRI  600
RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  660
RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM KQPSETYLLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555886914107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336345QRDFPFKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.232210.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076270.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241221.10.0telomere repeat-binding protein 5 isoform X4
SwissprotQ6R0E31e-127TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A3Q7H4740.0A0A3Q7H474_SOLLC; Uncharacterized protein
STRINGSolyc06g076270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]