PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g075780.1.1
Common NameLOC101254394
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 155aa    MW: 17637.4 Da    PI: 9.8421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g075780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177799123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +Cg+ Fs    L  H+r+H
  Solyc06g075780.1.1 77 HECLICGMEFSMGQALGGHMRRH 99
                        78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.67E-73399No hitNo description
PROSITE profilePS501579.393456IPR007087Zinc finger, C2H2
PfamPF139127.8E-113458IPR007087Zinc finger, C2H2
SMARTSM003550.473456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PfamPF139125.3E-1076101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1277104IPR007087Zinc finger, C2H2
SMARTSM003550.287799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MIKIREDKGE VEAQAMANCL MLLSSIDRDR RNSFECKTCK RRFSSFQALG GHRTSHKSTI  60
DIGKFLHGKI SKKRKVHECL ICGMEFSMGQ ALGGHMRRHR APVNEIEHSA KRIPVLKKSN  120
SNERIFCVDL NLTPDENDDF HFWPMPPVPP FLSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.140250.0flower| fruit| root
Function -- GeneRIF ? help Back to Top
  1. Results reveal that the relative expression of ZAT12 as well as heat induced Hsp17.4 and Hsp21 gene transcripts increased in transgenic upon exposure to HS. The transformed tomato lines ZT1 and ZT5 had significantly lowered free radical formation
    [PMID: 23962802]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g075780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887528.11e-111LOW QUALITY PROTEIN: zinc finger protein ZAT1
TrEMBLA0A3Q7H3L61e-107A0A3Q7H3L6_SOLLC; Uncharacterized protein
STRINGSolyc06g075780.1.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-33C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Shah K,Singh M,Rai AC
    Effect of heat-shock induced oxidative stress is suppressed in BcZAT12 expressing drought tolerant tomato.
    Phytochemistry, 2013. 95: p. 109-17
    [PMID:23962802]